If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ), 'gf_id' => 'HOM05D000866', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000866' ), 'data_identifier' => 'HOM05D000866', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000866', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p09080' => 'bna', 'A07p26380' => 'bna', 'A07p45520' => 'bna', 'A09p63780' => 'bna', 'A09p63790' => 'bna', 'A09p63800' => 'bna', 'Aa31LG1G2100' => 'aar', 'Aa31LG4G160' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4042' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2286' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.680' => 'aag', 'Actinidia08991' => 'ach', 'Actinidia14496' => 'ach', 'Actinidia21677' => 'ach', 'Actinidia24743' => 'ach', 'Actinidia32733' => 'ach', 'Ah.01g005540' => 'amhyb', 'Ah.01g021590' => 'amhyb', 'Ah.01g021600' => 'amhyb', 'Ah.05g175670' => 'amhyb', 'Ah.05g175680' => 'amhyb', 'AL1G23900' => 'aly', 'AL2G26040' => 'aly', 'AL2G41690' => 'aly', 'AL384U10040' => 'aly', 'AL4G44800' => 'aly', 'Aqoxy5G03948' => 'aox', 'Aqoxy5G03949' => 'aox', 'Aqoxy7G00510' => 'aox', 'Aqoxy7G03838' => 'aox', 'Aqoxy7G03840' => 'aox', 'Aqoxy7G03841' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y0851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UBI84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.594WWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BVL9F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JB3CU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2I1E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFC708' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU5VAW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2134M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJBZ0G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GP1H30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8D6U4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS1D1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYH2XP' => 'arhy', 'AT1G12550' => 'ath', 'AT1G79870' => 'ath', 'AT2G45630' => 'ath', 'AT5G28310' => 'ath', 'ATR0315G068' => 'atr', 'ATR0315G103' => 'atr', 'ATR0661G574' => 'atr', 'Atru.chr9.1495' => 'acertr', 'Atru.chr9.1496' => 'acertr', 'AUR62004267' => 'cqu', 'AUR62004268' => 'cqu', 'AUR62010556' => 'cqu', 'AUR62011648' => 'cqu', 'AUR62011649' => 'cqu', 'AUR62016476' => 'cqu', 'AUR62016477' => 'cqu', 'AUR62017333' => 'cqu', 'AUR62017334' => 'cqu', 'AUR62017335' => 'cqu', 'AUR62017497' => 'cqu', 'AUR62017500' => 'cqu', 'AUR62017502' => 'cqu', 'AUR62042756' => 'cqu', 'AUR62042757' => 'cqu', 'BcaB08g34265' => 'bca', 'BcaB08g34266' => 'bca', 'BcaB08g34267' => 'bca', 'BcaB08g34268' => 'bca', 'BcaB08g34269' => 'bca', 'BcaC01g00662' => 'bca', 'BcaC05g25133' => 'bca', 'BcaC05g25178' => 'bca', 'BcaC07g41693' => 'bca', 'BcaC07g41694' => 'bca', 'BcaC07g41695' => 'bca', 'BcaC08g42927' => 'bca', 'BcaC08g45274' => 'bca', 'BcaC08g47558' => 'bca', 'BcaC09g50028' => 'bca', 'BcaNung07151' => 'bca', 'BolC1t02924H' => 'bol', 'BolC5t29810H' => 'bol', 'BolC6t35296H' => 'bol', 'BolC6t38047H' => 'bol', 'BolC6t40446H' => 'bol', 'BolC8t52269H' => 'bol', 'BolC8t52271H' => 'bol', 'BolC8t52272H' => 'bol', 'BraA06t24096Z' => 'bra', 'BraA07t30282Z' => 'bra', 'BraA07t32054Z' => 'bra', 'BraA09t41726Z' => 'bra', 'BraA09t41727Z' => 'bra', 'C01p29840' => 'bna', 'C05p10680' => 'bna', 'C06p01660' => 'bna', 'C06p28770' => 'bna', 'C06p54350' => 'bna', 'C08p47280' => 'bna', 'C08p47290' => 'bna', 'C08p47300' => 'bna', 'CAN.G144.9' => 'can', 'CAN.G1561.10' => 'can', 'CAN.G1561.7' => 'can', 'CAN.G1561.8' => 'can', 'CAN.G1561.9' => 'can', 'CAN.G300.2' => 'can', 'CAN.G438.20' => 'can', 'CAN.G438.22' => 'can', 'CAN.G438.23' => 'can', 'CAN.G438.24' => 'can', 'CAN.G810.5' => 'can', 'CAN.G981.64' => 'can', 'CANSAT21G0952' => 'cansat', 'CANSAT21G2551' => 'cansat', 'CANSAT35G1446' => 'cansat', 'CANSAT56G1909' => 'cansat', 'CANSAT56G1953' => 'cansat', 'CANSAT56G3129' => 'cansat', 'CANSAT56G4219' => 'cansat', 'CARHR012830' => 'chi', 'CARHR074620' => 'chi', 'CARHR074640' => 'chi', 'CARHR140850' => 'chi', 'Carub.0001s1224' => 'cru', 'Carub.0002s2763' => 'cru', 'Carub.0004s2827' => 'cru', 'Ca_01128_v3' => 'car', 'Ca_20374_v3' => 'car', 'Ca_23787_v3' => 'car', 'Ca_23790_v3' => 'car', 'Ca_23791_v3' => 'car', 'Cc00_g34610' => 'ccan', 'Cc04_g03070' => 'ccan', 'Cc04_g03080' => 'ccan', 'Cc04_g03090' => 'ccan', 'Cc08_g01190' => 'ccan', 'CDE02G0909' => 'cde', 'CDE02G1928' => 'cde', 'CDE02G4768' => 'cde', 'Cfa001821' => 'cfa', 'Cfa001826' => 'cfa', 'Cfa001827' => 'cfa', 'Cfa002090' => 'cfa', 'Cfa002091' => 'cfa', 'Cfa012066' => 'cfa', 'Ciclev10020981m.g' => 'ccl', 'Ciclev10021082m.g' => 'ccl', 'Ciclev10024166m.g' => 'ccl', 'Ciclev10024328m.g' => 'ccl', 'Ciclev10026118m.g' => 'ccl', 'Ciclev10026120m.g' => 'ccl', 'Ciclev10026933m.g' => 'ccl', 'Ciclev10027173m.g' => 'ccl', 'CiPaw.01G236100' => 'cil', 'CiPaw.01G236200' => 'cil', 'CiPaw.01G258800' => 'cil', 'CiPaw.01G258900' => 'cil', 'CiPaw.02G168900' => 'cil', 'CiPaw.12G101100' => 'cil', 'CiPaw.12G101200' => 'cil', 'ClCG05G001950' => 'cla', 'ClCG05G002010' => 'cla', 'ClCG09G001970' => 'cla', 'COL.COLO4_02557' => 'col', 'COL.COLO4_04354' => 'col', 'COL.COLO4_07274' => 'col', 'COL.COLO4_11413' => 'col', 'COL.COLO4_12596' => 'col', 'COL.COLO4_12597' => 'col', 'COL.COLO4_12659' => 'col', 'COL.COLO4_23802' => 'col', 'COL.COLO4_23803' => 'col', 'COL.COLO4_30430' => 'col', 'COL.COLO4_30431' => 'col', 'COL.COLO4_30432' => 'col', 'Cpa.g.sc12.243' => 'cpa', 'Cpa.g.sc46.191' => 'cpa', 'Cpa.g.sc586.1' => 'cpa', 'Cpa.g.sc586.2' => 'cpa', 'CsaV3_3G009350' => 'csa', 'CsaV3_3G009360' => 'csa', 'CsaV3_3G009430' => 'csa', 'CsaV3_3G009440' => 'csa', 'CsaV3_3G009450' => 'csa', 'CsaV3_7G033350' => 'csa', 'CsaV3_7G033380' => 'csa', 'CsaV3_7G033390' => 'csa', 'CSS0006058' => 'camsi', 'CSS0019631' => 'camsi', 'CSS0032401' => 'camsi', 'CSS0034291' => 'camsi', 'CSS0038755' => 'camsi', 'CSS0049207' => 'camsi', 'DCAR_006773' => 'dca', 'DCAR_007568' => 'dca', 'DCAR_008434' => 'dca', 'DCAR_008435' => 'dca', 'DCAR_016212' => 'dca', 'DCAR_016213' => 'dca', 'DCAR_025130' => 'dca', 'Dinv30484' => 'din', 'Dinv32402' => 'din', 'Dinv32403' => 'din', 'Dinv37710' => 'din', 'Dinv37712' => 'din', 'Dinv38026' => 'din', 'Dinv38027' => 'din', 'Dinv41355' => 'din', 'Duzib084G0226' => 'dzi', 'Duzib138G0936' => 'dzi', 'Duzib138G1579' => 'dzi', 'Duzib138G1865' => 'dzi', 'Duzib205G1278' => 'dzi', 'Duzib235G1017' => 'dzi', 'ECA232G3571' => 'eca', 'ECA234G0219' => 'eca', 'ECA234G0783' => 'eca', 'ECA234G2713' => 'eca', 'ECA236G0308' => 'eca', 'ECA236G5068' => 'eca', 'ECA246G2104' => 'eca', 'ECA246G3002' => 'eca', 'EL10Ac1g00943' => 'bvu', 'EL10Ac5g12682' => 'bvu', 'EL10Ac9g22026' => 'bvu', 'Eucgr.D01946' => 'egr', 'Eucgr.D01947' => 'egr', 'Eucgr.E01337' => 'egr', 'Eucgr.E01339' => 'egr', 'Eucgr.E01340' => 'egr', 'Eucgr.E01341' => 'egr', 'Eucgr.E01342' => 'egr', 'Eucgr.E01346' => 'egr', 'Eucgr.E01347' => 'egr', 'Eucgr.E01349' => 'egr', 'Eucgr.F03036' => 'egr', 'Eucgr.J02960' => 'egr', 'FAN01G2836' => 'fan', 'FAN02G1042' => 'fan', 'FAN03G0835' => 'fan', 'FAN03G3205' => 'fan', 'FAN04G1364' => 'fan', 'FAN05G3816' => 'fan', 'FAN06G1331' => 'fan', 'FAN06G2237' => 'fan', 'FAN06G3495' => 'fan', 'FAN06G3914' => 'fan', 'FAN06G4329' => 'fan', 'FAN08G1757' => 'fan', 'FAN09G3027' => 'fan', 'FAN10G0148' => 'fan', 'FAN10G1184' => 'fan', 'FAN10G1711' => 'fan', 'FAN10G2539' => 'fan', 'FAN10G2991' => 'fan', 'FAN10G3568' => 'fan', 'FAN13G0791' => 'fan', 'FAN14G0273' => 'fan', 'FAN18G4488' => 'fan', 'FvH4_5g38060' => 'fve', 'FvH4_6g31711' => 'fve', 'FvH4_6g31720' => 'fve', 'FvH4_6g31721' => 'fve', 'FvH4_7g12570' => 'fve', 'FvH4_7g12580' => 'fve', 'FvH4_7g12581' => 'fve', 'FvH4_7g12590' => 'fve', 'Glyma.03G019950' => 'gma', 'Glyma.07G019900' => 'gma', 'Glyma.07G081800' => 'gma', 'Glyma.07G081900' => 'gma', 'Glyma.07G082000' => 'gma', 'Glyma.07G082100' => 'gma', 'Glyma.08G205000' => 'gma', 'Glyma.15G016100' => 'gma', 'Gohir.A03G012900' => 'ghi', 'Gohir.A03G013000' => 'ghi', 'Gohir.A05G131500' => 'ghi', 'Gohir.A07G145000' => 'ghi', 'Gohir.A09G082100' => 'ghi', 'Gohir.A12G223401' => 'ghi', 'Gohir.D03G156500' => 'ghi', 'Gohir.D03G156600' => 'ghi', 'Gohir.D05G131000' => 'ghi', 'Gohir.D07G151200' => 'ghi', 'Gohir.D09G081900' => 'ghi', 'Gohir.D12G226050' => 'ghi', 'Gorai.001G173100' => 'gra', 'Gorai.003G164200' => 'gra', 'Gorai.003G164300' => 'gra', 'Gorai.003G164400' => 'gra', 'Gorai.003G164500' => 'gra', 'Gorai.006G097500' => 'gra', 'Gorai.008G242000' => 'gra', 'Gorai.009G134700' => 'gra', 'GSVIVG01017067001' => 'vvi', 'GSVIVG01017069001' => 'vvi', 'GSVIVG01019893001' => 'vvi', 'GSVIVG01019894001' => 'vvi', 'HanXRQChr03g0076601' => 'han', 'HanXRQChr03g0077221' => 'han', 'HanXRQChr04g0122051' => 'han', 'HanXRQChr04g0122061' => 'han', 'HanXRQChr04g0122071' => 'han', 'HanXRQChr04g0122081' => 'han', 'HanXRQChr06g0169261' => 'han', 'HanXRQChr07g0203031' => 'han', 'HanXRQChr10g0313431' => 'han', 'HanXRQChr12g0360761' => 'han', 'HanXRQChr16g0500881' => 'han', 'HanXRQChr16g0523461' => 'han', 'HanXRQChr17g0533641' => 'han', 'Haze_01096' => 'cav', 'Haze_02618' => 'cav', 'Haze_08991' => 'cav', 'Haze_08992' => 'cav', 'Haze_09000' => 'cav', 'Haze_16366' => 'cav', 'Haze_16367' => 'cav', 'Haze_16718' => 'cav', 'Haze_16719' => 'cav', 'Haze_27331' => 'cav', 'Hma1.2p1_0371F.1_g138310' => 'hma', 'Hma1.2p1_2022F.1_g311390' => 'hma', 'HPP92_003933' => 'vpl', 'HPP92_008874' => 'vpl', 'Hund00639' => 'sun', 'Hund00640' => 'sun', 'Hund11542' => 'sun', 'Lalb_Chr12g0208481' => 'lal', 'Lalb_Chr14g0373251' => 'lal', 'Lalb_Chr17g0340111' => 'lal', 'Lalb_Chr25g0279951' => 'lal', 'Lj2A202T60' => 'lonja', 'Lj2g0003956' => 'lja', 'Lj2g0003971' => 'lja', 'Lj2g0008923' => 'lja', 'Lj3C153T0' => 'lonja', 'Lj3g0011555' => 'lja', 'Lj3g0012742' => 'lja', 'Lj3g0024189' => 'lja', 'Lj5A58T68' => 'lonja', 'Lj7C524T15' => 'lonja', 'Lj8A243T43' => 'lonja', 'Lj9A509T90' => 'lonja', 'Lj9A509T91' => 'lonja', 'Lj9A573T81' => 'lonja', 'Lsat_1_v5_gn_1_4620' => 'lsa', 'Lsat_1_v5_gn_3_4541' => 'lsa', 'Lsat_1_v5_gn_4_102800' => 'lsa', 'Lsat_1_v5_gn_4_37521' => 'lsa', 'Lsat_1_v5_gn_4_69961' => 'lsa', 'Lsat_1_v5_gn_5_130781' => 'lsa', 'Lsat_1_v5_gn_5_130801' => 'lsa', 'Lsat_1_v5_gn_5_130841' => 'lsa', 'Lsat_1_v5_gn_5_130860' => 'lsa', 'Lsat_1_v5_gn_7_6261' => 'lsa', 'Lsat_1_v5_gn_7_6300' => 'lsa', 'Lsat_1_v5_gn_7_6320' => 'lsa', 'Manes.01G070300' => 'mes', 'Manes.02G030001' => 'mes', 'Manes.04G129400' => 'mes', 'Manes.04G129500' => 'mes', 'Manes.04G129600' => 'mes', 'Manes.04G129750' => 'mes', 'Manes.05G042400' => 'mes', 'Manes.05G042500' => 'mes', 'Manes.05G042600' => 'mes', 'Manes.11G037900' => 'mes', 'Mapoly0001s0306' => 'mpo', 'Mapoly0019s0120' => 'mpo', 'MBI01_g07174_MAGBIO' => 'mbi', 'MBI01_g07175_MAGBIO' => 'mbi', 'MBI01_g11035_MAGBIO' => 'mbi', 'MBI01_g35856_MAGBIO' => 'mbi', 'MBI04_g19168_MAGBIO' => 'mbi', 'MBI04_g19170_MAGBIO' => 'mbi', 'MD02G1197100' => 'mdo', 'MD07G1124400' => 'mdo', 'MD07G1124500' => 'mdo', 'MD09G1209700' => 'mdo', 'MD09G1209800' => 'mdo', 'MD17G1191700' => 'mdo', 'Medtr2g101840' => 'mtr', 'Medtr4g012960' => 'mtr', 'Medtr4g013040' => 'mtr', 'Medtr4g013090' => 'mtr', 'Medtr4g013100' => 'mtr', 'Medtr4g013135' => 'mtr', 'Medtr7g075830' => 'mtr', 'Medtr8g033390' => 'mtr', 'Medtr8g033400' => 'mtr', 'Medtr8g033410' => 'mtr', 'MELO3C001055.2' => 'cme', 'MELO3C006155.2' => 'cme', 'MELO3C006163.2' => 'cme', 'MELO3C006164.2' => 'cme', 'MELO3C006165.2' => 'cme', 'MELO3C006166.2' => 'cme', 'MELO3C024249.2' => 'cme', 'MELO3C024250.2' => 'cme', 'MELO3C024251.2' => 'cme', 'MELO3C024252.2' => 'cme', 'Migut.A00894' => 'egut', 'Migut.D01019' => 'egut', 'Migut.I00945' => 'egut', 'Migut.I00946' => 'egut', 'Migut.N01411' => 'egut', 'MSTRG.11055' => 'ama', 'MSTRG.11056' => 'ama', 'MSTRG.11057' => 'ama', 'MSTRG.20776' => 'ama', 'MSTRG.22666' => 'ama', 'MSTRG.28198' => 'ama', 'Nitab4.5_0001315g0140' => 'nta', 'Nitab4.5_0001867g0020' => 'nta', 'Nitab4.5_0001867g0030' => 'nta', 'Nitab4.5_0001968g0050' => 'nta', 'Nitab4.5_0001968g0060' => 'nta', 'Nitab4.5_0002436g0120' => 'nta', 'Nitab4.5_0002859g0080' => 'nta', 'Nitab4.5_0002859g0150' => 'nta', 'Nitab4.5_0003274g0080' => 'nta', 'Nitab4.5_0003418g0040' => 'nta', 'Nitab4.5_0008042g0030' => 'nta', 'Nitab4.5_0010547g0020' => 'nta', 'Nn2g11701' => 'nnu', 'Nn2g11703' => 'nnu', 'Nn2g13857' => 'nnu', 'Nn3g18069' => 'nnu', 'Nn6g34330' => 'nnu', 'Oeu008622.1' => 'oeu', 'Oeu008623.1' => 'oeu', 'Oeu029640.1' => 'oeu', 'Oeu029641.1' => 'oeu', 'Oeu029642.1' => 'oeu', 'Oeu033505.1' => 'oeu', 'Oeu036295.1' => 'oeu', 'Oeu040366.1' => 'oeu', 'Os01g0228600' => 'osa', 'Os04g0106400' => 'osa', 'Os04g0107200' => 'osa', 'Os04g0107300' => 'osa', 'Os04g0107500' => 'osa', 'Os07g0597500' => 'osa', 'Os08g0445500' => 'osa', 'Os11g0229100' => 'osa', 'Peaxi162Scf00015g00040' => 'pax', 'Peaxi162Scf00015g00041' => 'pax', 'Peaxi162Scf00034g00052' => 'pax', 'Peaxi162Scf00071g00082' => 'pax', 'Peaxi162Scf00165g00217' => 'pax', 'Peaxi162Scf00620g00539' => 'pax', 'Peaxi162Scf00988g00210' => 'pax', 'Peaxi162Scf00988g00213' => 'pax', 'Peaxi162Scf00988g00324' => 'pax', 'PGR031G1351' => 'pgr', 'PGR031G1430' => 'pgr', 'PGR031G1846' => 'pgr', 'PGR042G0455' => 'pgr', 'PGR042G1703' => 'pgr', 'PGR102G2089' => 'pgr', 'PGR102G2584' => 'pgr', 'PGSC0003DMG400007572' => 'stu', 'PGSC0003DMG400007573' => 'stu', 'PGSC0003DMG400022729' => 'stu', 'PGSC0003DMG400022730' => 'stu', 'Phvul.005G168600' => 'pvu', 'Phvul.010G086901' => 'pvu', 'Phvul.010G087100' => 'pvu', 'Phvul.010G087300' => 'pvu', 'Phvul.010G149000' => 'pvu', 'Potri.001G113250' => 'ptr', 'Potri.001G183700' => 'ptr', 'Potri.002G151100' => 'ptr', 'Potri.002G151200' => 'ptr', 'Potri.003G052700' => 'ptr', 'Potri.003G119000' => 'ptr', 'Potri.013G046150' => 'ptr', 'Potri.014G073400' => 'ptr', 'Potri.014G073500' => 'ptr', 'Potri.014G073600' => 'ptr', 'Pp3c13_4850' => 'ppa', 'Pp3c3_2990' => 'ppa', 'Prupe.2G149900' => 'ppe', 'Prupe.2G150000' => 'ppe', 'Prupe.2G150200' => 'ppe', 'Prupe.2G150300' => 'ppe', 'Prupe.2G150400' => 'ppe', 'Prupe.2G150500' => 'ppe', 'Prupe.2G150600' => 'ppe', 'Prupe.2G151500' => 'ppe', 'Prupe.2G151800' => 'ppe', 'Prupe.3G067700' => 'ppe', 'Prupe.3G067800' => 'ppe', 'Psat0s4064g0040' => 'psa', 'Psat0ss4236g0120' => 'psa', 'Psat0ss4236g0160' => 'psa', 'Psat4g150720' => 'psa', 'Psat4g150760' => 'psa', 'Psat4g150800' => 'psa', 'Psat5g119640' => 'psa', 'Psat5g298160' => 'psa', 'Psat7g250240' => 'psa', 'PSO063G2240' => 'pso', 'PSO210G0809' => 'pso', 'PSO210G1258' => 'pso', 'PSO478G0155' => 'pso', 'PSO478G0549' => 'pso', 'PSO478G1269' => 'pso', 'PSO478G2356' => 'pso', 'PSO478G5328' => 'pso', 'PSO782G0871' => 'pso', 'PSO782G1484' => 'pso', 'PSO782G2364' => 'pso', 'PSO782G3352' => 'pso', 'PSO782G4632' => 'pso', 'PSO782G5064' => 'pso', 'QL05p021804' => 'qlo', 'QL05p021809' => 'qlo', 'QL05p021818' => 'qlo', 'QL05p024961' => 'qlo', 'QL05p025085' => 'qlo', 'QL05p025094' => 'qlo', 'QL06p001856' => 'qlo', 'QL08p051301' => 'qlo', 'QL08p051306' => 'qlo', 'QL08p051313' => 'qlo', 'QL08p051316' => 'qlo', 'QL08p051344' => 'qlo', 'QL10p012779' => 'qlo', 'QL12p016208' => 'qlo', 'QL12p016212' => 'qlo', 'QL93p0336_0070' => 'qlo', 'QL93p0336_0072' => 'qlo', 'RcHm_v2.0_Chr1g0351471' => 'rch', 'RcHm_v2.0_Chr1g0351501' => 'rch', 'RcHm_v2.0_Chr1g0351521' => 'rch', 'RcHm_v2.0_Chr1g0351531' => 'rch', 'RcHm_v2.0_Chr1g0351541' => 'rch', 'RcHm_v2.0_Chr1g0351551' => 'rch', 'RcHm_v2.0_Chr1g0351561' => 'rch', 'RcHm_v2.0_Chr1g0351571' => 'rch', 'RcHm_v2.0_Chr2g0138801' => 'rch', 'RcHm_v2.0_Chr2g0138881' => 'rch', 'RcHm_v2.0_Chr2g0138891' => 'rch', 'RcHm_v2.0_Chr2g0138911' => 'rch', 'RcHm_v2.0_Chr5g0049221' => 'rch', 'RcHm_v2.0_Chr6g0297861' => 'rch', 'Rhsim01G0160800' => 'rsi', 'Rhsim02G0243000' => 'rsi', 'Rhsim02G0243100' => 'rsi', 'Rhsim02G0243200' => 'rsi', 'Rhsim02G0243300' => 'rsi', 'Rhsim03G0253800' => 'rsi', 'Rhsim04G0170200' => 'rsi', 'Rhsim07G0023500' => 'rsi', 'Rhsim07G0023600' => 'rsi', 'Rhsim08G0223100' => 'rsi', 'Rhsim12G0200000' => 'rsi', 'Sabra01G0086600' => 'sbr', 'Sabra01G0155600' => 'sbr', 'Sabra02G0119400' => 'sbr', 'Sabra02G0119500' => 'sbr', 'Sabra03G0026700' => 'sbr', 'Sabra14G0052500' => 'sbr', 'Sabra14G0052600' => 'sbr', 'SalBow1G7013' => 'sbo', 'SalBow2G0922' => 'sbo', 'SalBow2G0933' => 'sbo', 'SalBow2G2243' => 'sbo', 'SalBow5G1188' => 'sbo', 'SalBow5G5643' => 'sbo', 'SalBow6G0684' => 'sbo', 'SalBow6G2862' => 'sbo', 'SalBow6G3253' => 'sbo', 'SalBow6G4690' => 'sbo', 'Sc02g0002330' => 'sci', 'Sc02g0002350' => 'sci', 'Sc10g0007300' => 'sci', 'Sc12g0009400' => 'sci', 'Sc12g0009410' => 'sci', 'Sc26g0001110' => 'sci', 'Sed0001618' => 'sed', 'Sed0004319' => 'sed', 'Sed0016759' => 'sed', 'Sed0020147' => 'sed', 'Sed0026376' => 'sed', 'Sed0026612' => 'sed', 'SEGI_15119' => 'sgi', 'SEGI_16794' => 'sgi', 'SEGI_29921' => 'sgi', 'SEGI_30200' => 'sgi', 'SEGI_31086' => 'sgi', 'SEGI_35051' => 'sgi', 'SEGI_36280' => 'sgi', 'SEGI_40797' => 'sgi', 'SGA_v2.0_scaffold43G16459' => 'sas', 'SGA_v2.0_scaffold4G02006' => 'sas', 'SGA_v2.0_scaffold5G02560' => 'sas', 'SMO165G0004' => 'smo', 'SMO352G0062' => 'smo', 'Solyc01g093990.3' => 'sly', 'Solyc03g120660.4' => 'sly', 'Solyc03g120670.3' => 'sly', 'Solyc03g120680.3' => 'sly', 'Solyc08g080030.4' => 'sly', 'Solyc12g044250.2' => 'sly', 'Solyc12g044260.2' => 'sly', 'Sopen01g037800' => 'spe', 'Sopen01g037810' => 'spe', 'Sopen03g008030' => 'spe', 'Sopen03g039480' => 'spe', 'Sopen03g039490' => 'spe', 'Sopen03g039500' => 'spe', 'Sopen08g028380' => 'spe', 'Sopen11g016170' => 'spe', 'Sopen12g022490' => 'spe', 'Sopen12g022500' => 'spe', 'Sp1g11130' => 'spa', 'Sp1g11140' => 'spa', 'Sp5g35900' => 'spa', 'TAR374G0232' => 'tar', 'TAR374G0351' => 'tar', 'TAR374G1291' => 'tar', 'TAR383G1100' => 'tar', 'TAR622G0316' => 'tar', 'TAR629G2395' => 'tar', 'TAR636G0331' => 'tar', 'TAR636G2241' => 'tar', 'THA.LOC104800424' => 'tha', 'THA.LOC104800425' => 'tha', 'THA.LOC104809432' => 'tha', 'THA.LOC104827621' => 'tha', 'Thecc.01G371800' => 'tca', 'Thecc.01G371900' => 'tca', 'Thecc.01G372000' => 'tca', 'Thecc.01G372100' => 'tca', 'Thecc.03G267200' => 'tca', 'Thecc.03G267400' => 'tca', 'Thecc.03G267500' => 'tca', 'Thecc.06G091900' => 'tca', 'Thecc.06G092000' => 'tca', 'Thhalv10008209m.g' => 'esa', 'Thhalv10008292m.g' => 'esa', 'Thhalv10018906m.g' => 'esa', 'TPR.G11070' => 'tpr', 'TPR.G14677' => 'tpr', 'TPR.G14687' => 'tpr', 'TPR.G17680' => 'tpr', 'TPR.G17692' => 'tpr', 'TPR.G37266' => 'tpr', 'TPR.G37728' => 'tpr', 'TPR.G37787' => 'tpr', 'TWI14G1247' => 'twi', 'TWI18G0187' => 'twi', 'TWI59G0360' => 'twi', 'TWI59G1114' => 'twi', 'TWI60G1691' => 'twi', 'TWI75G0090' => 'twi', 'TWI81G0351' => 'twi', 'unitig_22.g6715' => 'ugi', 'unitig_37.g12252' => 'ugi', 'unitig_748.g7430' => 'ugi', 'vmacro05389' => 'vma', 'vmacro11425' => 'vma', 'vmacro13363' => 'vma', 'vmacro16968' => 'vma', 'vmacro18890' => 'vma', 'vmacro18893' => 'vma', 'vmacro20991' => 'vma', 'VMungo0331G0343' => 'vmu', 'VMungo0331G0579' => 'vmu', 'VMungo0331G1329' => 'vmu', 'VMungo0331G1354' => 'vmu', 'VMungo0331G1561' => 'vmu', 'VMungo0331G1737' => 'vmu', 'VMungo1080G1071' => 'vmu', 'Zm00001eb027920' => 'zma', 'Zm00001eb088840' => 'zma', 'Zm00001eb299920' => 'zma', 'Zm00001eb338070' => 'zma', 'Zm00001eb418650' => 'zma', 'Zm00001eb418680' => 'zma' ) $gf_id = 'HOM05D000866' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000866' ) $data_identifier = 'HOM05D000866' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 2, 'aag' => (int) 4, 'ach' => (int) 5, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 15, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 12, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 6, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 6, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 3, 'lal' => (int) 4, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418680' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1